J3_8JDM_030
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 8JDM|1|D|C|2470, 8JDM|1|D|A|2472, 8JDM|1|D|G|2475, 8JDM|1|D|G|2503, 8JDM|1|D|C|2504
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDM_030 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5965
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8JDM|1|D|A|2451
8JDM|1|D|G|2452
8JDM|1|D|A|2453
8JDM|1|D|U|2454
8JDM|1|D|G|2455
8JDM|1|D|G|2456
*
8JDM|1|D|C|2465
8JDM|1|D|G|2466
8JDM|1|D|U|2467
8JDM|1|D|U|2468
8JDM|1|D|C|2469
8JDM|1|D|C|2470
8JDM|1|D|G|2471
8JDM|1|D|A|2472
8JDM|1|D|A|2473
8JDM|1|D|G|2474
8JDM|1|D|G|2475
8JDM|1|D|G|2476
*
8JDM|1|D|C|2501
8JDM|1|D|G|2502
8JDM|1|D|G|2503
8JDM|1|D|C|2504
8JDM|1|D|C|2505
8JDM|1|D|G|2506
8JDM|1|D|A|2507
8JDM|1|D|PSU|2508
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain F
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8
- Chain M
- 60S ribosomal protein L7a
- Chain S
- 60S ribosomal protein L15
- Chain c
- 60S ribosomal protein L23a
- Chain o
- 60S ribosomal protein L37
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