J3_8JDM_044
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDM_044 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.1039
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8JDM|1|w|U|1350
8JDM|1|w|G|1351
*
8JDM|1|w|U|1360
8JDM|1|w|G|1361
8JDM|1|w|U|1362
8JDM|1|w|C|1363
*
8JDM|1|w|G|1375
8JDM|1|w|A|1376
8JDM|1|w|U|1377
8JDM|1|w|A|1378
8JDM|1|w|A|1379
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AD
- 40S ribosomal protein S17
- Chain x
- 40S ribosomal protein SA
- Chain z
- 40S ribosomal protein S2
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