J3_8JSG_004
3D structure
- PDB id
- 8JSG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S-IF3 complex from Escherichia coli
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUAC*GGCUAC
- Length
- 27 nucleotides
- Bulged bases
- 8JSG|1|g|A|975, 8JSG|1|g|G|976, 8JSG|1|g|A|977, 8JSG|1|g|U|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JSG_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.4966
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8JSG|1|g|G|954
8JSG|1|g|U|955
8JSG|1|g|U|956
8JSG|1|g|U|957
8JSG|1|g|A|958
8JSG|1|g|A|959
8JSG|1|g|U|960
8JSG|1|g|U|961
8JSG|1|g|C|962
*
8JSG|1|g|G|973
8JSG|1|g|A|974
8JSG|1|g|A|975
8JSG|1|g|G|976
8JSG|1|g|A|977
8JSG|1|g|A|978
8JSG|1|g|C|979
8JSG|1|g|C|980
8JSG|1|g|U|981
8JSG|1|g|U|982
8JSG|1|g|A|983
8JSG|1|g|C|984
*
8JSG|1|g|G|1221
8JSG|1|g|G|1222
8JSG|1|g|C|1223
8JSG|1|g|U|1224
8JSG|1|g|A|1225
8JSG|1|g|C|1226
Current chains
- Chain g
- 16S ribosomal RNA
Nearby chains
- Chain r
- Small ribosomal subunit protein uS10
- Chain s
- Small ribosomal subunit protein uS13
- Chain w
- Small ribosomal subunit protein uS14
- Chain z
- Small ribosomal subunit protein uS19
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