J3_8JSG_011

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

8JSG|1|g|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JSG_011 not in the Motif Atlas

Geometric match to J3_1KUQ_001

Geometric discrepancy: 0.1633

The information below is about J3_1KUQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8JSG|1|g|C|586
8JSG|1|g|G|587
8JSG|1|g|G|588
*
8JSG|1|g|C|651
8JSG|1|g|U|652
8JSG|1|g|U|653
8JSG|1|g|G|654
*
8JSG|1|g|C|754
8JSG|1|g|G|755

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein uS17

Chain p

Small ribosomal subunit protein uS8

Chain t

Small ribosomal subunit protein uS12

Chain u

Small ribosomal subunit protein uS15