J3_8K2A_002

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K2A_002 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.1409

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8K2A|1|L1|C|260
8K2A|1|L1|A|261
8K2A|1|L1|G|262
*
8K2A|1|L1|C|272
8K2A|1|L1|A|273
8K2A|1|L1|C|274
8K2A|1|L1|A|275
8K2A|1|L1|C|276
*
8K2A|1|L1|G|300
8K2A|1|L1|A|301
8K2A|1|L1|A|302
8K2A|1|L1|G|303

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lk

Large ribosomal subunit protein mL37