J3_8K2A_005

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8K2A|1|L1|A|1335, 8K2A|1|L1|U|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K2A_005 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.08

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

8K2A|1|L1|C|1334
8K2A|1|L1|A|1335
8K2A|1|L1|U|1336
8K2A|1|L1|C|1337
*
8K2A|1|L1|G|1362
8K2A|1|L1|U|1363
8K2A|1|L1|U|1364
*
8K2A|1|L1|A|1378
8K2A|1|L1|U|1379
8K2A|1|L1|U|1380
8K2A|1|L1|A|1381
8K2A|1|L1|A|1382
8K2A|1|L1|A|1383
8K2A|1|L1|G|1384

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LN

Large ribosomal subunit protein uL14m

Chain SR

Large ribosomal subunit protein mL66