J3_8K2B_002

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K2B_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1412

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8K2B|1|L1|C|260
8K2B|1|L1|A|261
8K2B|1|L1|G|262
*
8K2B|1|L1|C|272
8K2B|1|L1|A|273
8K2B|1|L1|C|274
8K2B|1|L1|A|275
8K2B|1|L1|C|276
*
8K2B|1|L1|G|300
8K2B|1|L1|A|301
8K2B|1|L1|A|302
8K2B|1|L1|G|303

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lk

Large ribosomal subunit protein mL37