J3_8K2B_003

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAAGCCUG*CAACC*GCA

Length

16 nucleotides

Bulged bases

8K2B|1|L1|A|755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2B|1|L1|U|666
8K2B|1|L1|A|667
8K2B|1|L1|A|668
8K2B|1|L1|G|669
8K2B|1|L1|C|670
8K2B|1|L1|C|671
8K2B|1|L1|U|672
8K2B|1|L1|G|673
*
8K2B|1|L1|C|753
8K2B|1|L1|A|754
8K2B|1|L1|A|755
8K2B|1|L1|C|756
8K2B|1|L1|C|757
*
8K2B|1|L1|G|766
8K2B|1|L1|C|767
8K2B|1|L1|A|768

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LW

Large ribosomal subunit protein uL23m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41

Chain Sf

Large ribosomal subunit protein mL65