J3_8K2B_009

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCA*UCAAUUGAUCC*GACCAAC

Length

21 nucleotides

Bulged bases

8K2B|1|L1|U|1225, 8K2B|1|L1|A|1244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2B|1|L1|G|1176
8K2B|1|L1|C|1177
8K2B|1|L1|A|1178
*
8K2B|1|L1|U|1220
8K2B|1|L1|C|1221
8K2B|1|L1|A|1222
8K2B|1|L1|A|1223
8K2B|1|L1|U|1224
8K2B|1|L1|U|1225
8K2B|1|L1|G|1226
8K2B|1|L1|A|1227
8K2B|1|L1|U|1228
8K2B|1|L1|C|1229
8K2B|1|L1|C|1230
*
8K2B|1|L1|G|1239
8K2B|1|L1|A|1240
8K2B|1|L1|C|1241
8K2B|1|L1|C|1242
8K2B|1|L1|A|1243
8K2B|1|L1|A|1244
8K2B|1|L1|C|1245

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LO

Large ribosomal subunit protein uL15m

Chain La

Large ribosomal subunit protein bL27m

Chain Lg

Large ribosomal subunit protein bL33m

Chain Li

Large ribosomal subunit protein bL35m