J3_8K2C_010
3D structure
- PDB id
- 8K2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8K2C|1|L5|A|4280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2C_010 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.1594
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8K2C|1|L5|C|4241
8K2C|1|L5|U|4242
8K2C|1|L5|C|4243
*
8K2C|1|L5|G|4267
8K2C|1|L5|A|4268
8K2C|1|L5|G|4269
*
8K2C|1|L5|C|4278
8K2C|1|L5|A|4279
8K2C|1|L5|A|4280
8K2C|1|L5|A|4281
8K2C|1|L5|A|4282
8K2C|1|L5|G|4283
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LJ
- 60S ribosomal protein L11
- Chain LT
- 60S ribosomal protein L21
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