J3_8K2D_013
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8K2D|1|C2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_013 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0784
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8K2D|1|C2|A|881
8K2D|1|C2|U|882
8K2D|1|C2|C|883
8K2D|1|C2|A|884
*
8K2D|1|C2|U|928
8K2D|1|C2|A|929
8K2D|1|C2|A|930
8K2D|1|C2|C|931
8K2D|1|C2|U|932
8K2D|1|C2|A|933
8K2D|1|C2|C|934
8K2D|1|C2|U|935
8K2D|1|C2|G|936
*
8K2D|1|C2|C|943
8K2D|1|C2|A|944
8K2D|1|C2|U|945
8K2D|1|C2|U|946
8K2D|1|C2|U|947
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain Lp
- Large ribosomal subunit protein eL43A
- Chain SB
- 40S ribosomal protein S1-A
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14-A
- Chain Sa
- Small ribosomal subunit protein eS26B
Coloring options: