J3_8K2D_034
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 8K2D|1|C1|A|3172, 8K2D|1|C1|G|3173, 8K2D|1|C1|A|3215, 8K2D|1|C1|G|3216, 8K2D|1|C1|G|3219, 8K2D|1|C1|A|3268, 8K2D|1|C1|U|3270, 8K2D|1|C1|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_034 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1982
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8K2D|1|C1|U|3171
8K2D|1|C1|A|3172
8K2D|1|C1|G|3173
8K2D|1|C1|A|3174
8K2D|1|C1|U|3175
8K2D|1|C1|G|3176
*
8K2D|1|C1|C|3212
8K2D|1|C1|A|3213
8K2D|1|C1|U|3214
8K2D|1|C1|A|3215
8K2D|1|C1|G|3216
8K2D|1|C1|C|3217
8K2D|1|C1|A|3218
8K2D|1|C1|G|3219
8K2D|1|C1|G|3220
*
8K2D|1|C1|C|3265
8K2D|1|C1|G|3266
8K2D|1|C1|A|3267
8K2D|1|C1|A|3268
8K2D|1|C1|U|3269
8K2D|1|C1|U|3270
8K2D|1|C1|G|3271
8K2D|1|C1|C|3272
8K2D|1|C1|A|3273
8K2D|1|C1|A|3274
8K2D|1|C1|U|3275
8K2D|1|C1|G|3276
8K2D|1|C1|U|3277
8K2D|1|C1|C|3278
8K2D|1|C1|A|3279
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6A
- Chain LM
- Large ribosomal subunit protein eL14A
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain LP
- Large ribosomal subunit protein uL22A
- Chain Lf
- Large ribosomal subunit protein eL33A
Coloring options: