J3_8K2D_037
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 8K2D|1|C2|U|238, 8K2D|1|C2|C|239, 8K2D|1|C2|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2D|1|C2|A|213
8K2D|1|C2|G|214
8K2D|1|C2|A|215
8K2D|1|C2|U|216
8K2D|1|C2|A|217
8K2D|1|C2|A|218
8K2D|1|C2|A|219
8K2D|1|C2|A|220
8K2D|1|C2|A|221
8K2D|1|C2|A|222
8K2D|1|C2|U|223
8K2D|1|C2|C|224
8K2D|1|C2|A|225
8K2D|1|C2|A|226
8K2D|1|C2|U|227
8K2D|1|C2|G|228
*
8K2D|1|C2|C|237
8K2D|1|C2|U|238
8K2D|1|C2|C|239
8K2D|1|C2|U|240
8K2D|1|C2|U|241
8K2D|1|C2|U|242
8K2D|1|C2|G|243
*
8K2D|1|C2|C|250
8K2D|1|C2|A|251
8K2D|1|C2|U|252
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4-A
- Chain SG
- 40S ribosomal protein S6-A
- Chain SI
- 40S ribosomal protein S8-A
- Chain SL
- Small ribosomal subunit protein uS17A
Coloring options: