J3_8K2D_042
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8K2D|1|C3|U|60, 8K2D|1|C3|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_042 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0716
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8K2D|1|C3|A|44
8K2D|1|C3|C|45
*
8K2D|1|C3|G|58
8K2D|1|C3|A|59
8K2D|1|C3|U|60
8K2D|1|C3|A|61
8K2D|1|C3|C|62
8K2D|1|C3|G|63
8K2D|1|C3|U|64
*
8K2D|1|C3|A|96
8K2D|1|C3|A|97
8K2D|1|C3|U|98
8K2D|1|C3|C|99
8K2D|1|C3|U|100
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lh
- Large ribosomal subunit protein uL29A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Ll
- Large ribosomal subunit protein eL39
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