J3_8K3O_016
3D structure
- PDB id
- 8K3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- 8K3O|1|A|U|1086, 8K3O|1|A|A|1101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K3O_016 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.1754
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8K3O|1|A|U|1073
8K3O|1|A|G|1074
*
8K3O|1|A|U|1083
8K3O|1|A|G|1084
8K3O|1|A|U|1085
8K3O|1|A|U|1086
8K3O|1|A|G|1087
*
8K3O|1|A|C|1098
8K3O|1|A|G|1099
8K3O|1|A|C|1100
8K3O|1|A|A|1101
8K3O|1|A|A|1102
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
Coloring options: