J3_8K82_001
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 8K82|1|C1|U|117, 8K82|1|C1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0636
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C1|C|113
8K82|1|C1|A|114
8K82|1|C1|A|115
8K82|1|C1|A|116
8K82|1|C1|U|117
8K82|1|C1|U|118
8K82|1|C1|U|119
8K82|1|C1|G|120
8K82|1|C1|A|121
8K82|1|C1|A|122
8K82|1|C1|A|123
*
8K82|1|C1|U|149
8K82|1|C1|A|150
8K82|1|C1|A|151
8K82|1|C1|U|152
8K82|1|C1|U|153
8K82|1|C1|U|154
8K82|1|C1|G|155
8K82|1|C1|G|156
8K82|1|C1|A|157
8K82|1|C1|G|158
*
8K82|1|C1|C|263
8K82|1|C1|G|264
8K82|1|C1|A|265
8K82|1|C1|A|266
8K82|1|C1|G|267
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LG
- Large ribosomal subunit protein eL8A
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain Lh
- Large ribosomal subunit protein uL29A
- Chain Li
- Large ribosomal subunit protein eL36A
Coloring options: