J3_8K82_003
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 8K82|1|C1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_003 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.0954
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8K82|1|C1|A|828
8K82|1|C1|U|829
8K82|1|C1|A|830
8K82|1|C1|G|831
*
8K82|1|C1|C|863
8K82|1|C1|G|864
8K82|1|C1|U|865
8K82|1|C1|A|866
8K82|1|C1|G|867
*
8K82|1|C1|U|892
8K82|1|C1|C|893
8K82|1|C1|G|894
8K82|1|C1|A|895
8K82|1|C1|A|896
8K82|1|C1|U|897
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LR
- Large ribosomal subunit protein eL19A
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lp
- Large ribosomal subunit protein eL43A
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