J3_8K82_007
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_007 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.0597
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C1|A|2432
8K82|1|C1|U|2433
8K82|1|C1|U|2434
8K82|1|C1|G|2435
*
8K82|1|C1|C|2512
8K82|1|C1|U|2513
8K82|1|C1|U|2514
8K82|1|C1|A|2515
8K82|1|C1|U|2516
8K82|1|C1|U|2517
*
8K82|1|C1|A|2590
8K82|1|C1|A|2591
8K82|1|C1|G|2592
8K82|1|C1|A|2593
8K82|1|C1|C|2594
8K82|1|C1|A|2595
8K82|1|C1|U|2596
8K82|1|C1|U|2597
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LG
- Large ribosomal subunit protein eL8A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain Li
- Large ribosomal subunit protein eL36A
Coloring options: