J3_8K82_009
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8K82|1|C1|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_009 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.0705
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8K82|1|C1|C|2664
8K82|1|C1|U|2665
8K82|1|C1|C|2666
*
8K82|1|C1|G|2690
8K82|1|C1|A|2691
8K82|1|C1|A|2692
*
8K82|1|C1|U|2701
8K82|1|C1|A|2702
8K82|1|C1|A|2703
8K82|1|C1|A|2704
8K82|1|C1|A|2705
8K82|1|C1|G|2706
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain C5
- Transfer RNA; tRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LJ
- Large ribosomal subunit protein uL5A
- Chain LT
- Large ribosomal subunit protein eL21A
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