J3_8K82_014
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8K82|1|C2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_014 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1321
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C2|C|1037
8K82|1|C2|U|1038
8K82|1|C2|A|1039
*
8K82|1|C2|U|1079
8K82|1|C2|U|1080
8K82|1|C2|A|1081
8K82|1|C2|C|1082
8K82|1|C2|G|1083
*
8K82|1|C2|C|1090
8K82|1|C2|A|1091
8K82|1|C2|A|1092
8K82|1|C2|A|1093
8K82|1|C2|G|1094
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS2A
- Chain SC
- 40S ribosomal protein S2
- Chain SV
- Small ribosomal subunit protein eS21A
- Chain SW
- 40S ribosomal protein S22-A
- Chain Sa
- Small ribosomal subunit protein eS26B
- Chain Sb
- 40S ribosomal protein S27-A
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