J3_8K82_015

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K82_015 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.1909

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8K82|1|C2|C|1161
8K82|1|C2|C|1162
8K82|1|C2|A|1163
8K82|1|C2|G|1164
*
8K82|1|C2|C|1581
8K82|1|C2|U|1582
8K82|1|C2|A|1583
8K82|1|C2|G|1584
8K82|1|C2|U|1585
8K82|1|C2|A|1586
8K82|1|C2|A|1587
*
8K82|1|C2|U|1609
8K82|1|C2|G|1610
8K82|1|C2|A|1611
8K82|1|C2|U|1612
8K82|1|C2|U|1613
8K82|1|C2|A|1614
8K82|1|C2|C|1615
8K82|1|C2|G|1616

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS7

Chain SQ

Small ribosomal subunit protein uS9A

Chain Sc

Small ribosomal subunit protein eS28A