J3_8K82_024
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8K82|1|C1|U|343, 8K82|1|C1|A|351, 8K82|1|C3|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_024 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0525
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8K82|1|C1|C|340
8K82|1|C1|G|341
8K82|1|C1|A|342
8K82|1|C1|U|343
8K82|1|C1|A|344
8K82|1|C1|G|345
8K82|1|C1|C|346
8K82|1|C1|G|347
8K82|1|C1|A|348
8K82|1|C1|A|349
8K82|1|C1|C|350
8K82|1|C1|A|351
8K82|1|C1|A|352
8K82|1|C1|G|353
8K82|1|C1|U|354
8K82|1|C1|A|355
8K82|1|C1|C|356
*
8K82|1|C1|G|363
8K82|1|C1|G|364
8K82|1|C1|A|365
8K82|1|C1|A|366
8K82|1|C1|A|367
8K82|1|C1|G|368
*
8K82|1|C3|C|21
8K82|1|C3|U|22
8K82|1|C3|U|23
8K82|1|C3|G|24
Current chains
- Chain C1
- 23S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LY
- Large ribosomal subunit protein uL24A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Ll
- Large ribosomal subunit protein eL39
Coloring options: