J3_8K82_026
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8K82|1|C1|A|398, 8K82|1|C1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_026 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0715
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8K82|1|C1|A|369
8K82|1|C1|U|370
8K82|1|C1|G|371
8K82|1|C1|A|372
8K82|1|C1|A|373
8K82|1|C1|A|374
8K82|1|C1|A|375
8K82|1|C1|G|376
8K82|1|C1|A|377
8K82|1|C1|A|378
8K82|1|C1|C|379
*
8K82|1|C1|G|390
8K82|1|C1|A|391
8K82|1|C1|G|392
8K82|1|C1|U|393
8K82|1|C1|G|394
8K82|1|C1|A|395
8K82|1|C1|A|396
8K82|1|C1|A|397
8K82|1|C1|A|398
8K82|1|C1|A|399
8K82|1|C1|G|400
8K82|1|C1|U|401
8K82|1|C1|A|402
8K82|1|C1|C|403
8K82|1|C1|G|404
*
8K82|1|C3|C|19
8K82|1|C3|U|20
Current chains
- Chain C1
- 23S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LP
- Large ribosomal subunit protein uL22A
- Chain LY
- Large ribosomal subunit protein uL24A
- Chain Ll
- Large ribosomal subunit protein eL39
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