J3_8K82_027
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8K82|1|C1|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_027 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0849
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83726.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C1|U|502
8K82|1|C1|C|503
*
8K82|1|C1|G|588
8K82|1|C1|A|589
8K82|1|C1|G|590
8K82|1|C1|G|591
8K82|1|C1|A|592
8K82|1|C1|C|593
8K82|1|C1|U|594
8K82|1|C1|G|595
8K82|1|C1|C|596
8K82|1|C1|G|597
*
8K82|1|C1|C|606
8K82|1|C1|A|607
8K82|1|C1|A|608
8K82|1|C1|G|609
8K82|1|C1|G|610
8K82|1|C1|A|611
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LE
- Large ribosomal subunit protein eL6A
- Chain LF
- Large ribosomal subunit protein uL30A
- Chain Le
- Large ribosomal subunit protein eL32
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