J3_8K82_034
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8K82|1|C1|C|2760, 8K82|1|C1|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_034 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0553
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8K82|1|C1|G|2651
8K82|1|C1|U|2652
8K82|1|C1|C|2653
*
8K82|1|C1|G|2754
8K82|1|C1|C|2755
8K82|1|C1|C|2756
8K82|1|C1|U|2757
8K82|1|C1|A|2758
8K82|1|C1|U|2759
8K82|1|C1|C|2760
8K82|1|C1|G|2761
8K82|1|C1|A|2762
8K82|1|C1|U|2763
8K82|1|C1|C|2764
8K82|1|C1|C|2765
*
8K82|1|C1|G|2793
8K82|1|C1|G|2794
8K82|1|C1|U|2795
8K82|1|C1|G|2796
8K82|1|C1|C|2797
8K82|1|C1|C|2798
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain CN
- General negative regulator of transcription subunit 5
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain LT
- Large ribosomal subunit protein eL21A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lo
- Large ribosomal subunit protein eL42A
Coloring options: