J3_8K82_037

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8K82|1|C2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K82_037 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0676

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8K82|1|C2|A|41
8K82|1|C2|G|42
8K82|1|C2|A|43
8K82|1|C2|U|44
8K82|1|C2|U|45
8K82|1|C2|A|46
8K82|1|C2|A|47
8K82|1|C2|G|48
*
8K82|1|C2|C|431
8K82|1|C2|G|432
8K82|1|C2|C|433
8K82|1|C2|G|434
8K82|1|C2|C|435
8K82|1|C2|A|436
8K82|1|C2|A|437
8K82|1|C2|A|438
8K82|1|C2|U|439
*
8K82|1|C2|A|464
8K82|1|C2|G|465
8K82|1|C2|U|466

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A