J3_8K82_041

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K82_041 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1033

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8K82|1|C2|U|1293
8K82|1|C2|G|1294
*
8K82|1|C2|U|1303
8K82|1|C2|G|1304
8K82|1|C2|U|1305
8K82|1|C2|C|1306
*
8K82|1|C2|G|1318
8K82|1|C2|A|1319
8K82|1|C2|U|1320
8K82|1|C2|A|1321
8K82|1|C2|A|1322

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2A

Chain SC

40S ribosomal protein S2

Chain SR

Small ribosomal subunit protein eS17A