J3_8K82_042
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 8K82|1|C2|U|1413, 8K82|1|C2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_042 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.0959
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C2|A|1336
8K82|1|C2|A|1337
8K82|1|C2|C|1338
*
8K82|1|C2|G|1386
8K82|1|C2|G|1387
8K82|1|C2|A|1388
8K82|1|C2|C|1389
8K82|1|C2|U|1390
8K82|1|C2|A|1391
*
8K82|1|C2|U|1407
8K82|1|C2|G|1408
8K82|1|C2|G|1409
8K82|1|C2|A|1410
8K82|1|C2|A|1411
8K82|1|C2|G|1412
8K82|1|C2|U|1413
8K82|1|C2|U|1414
8K82|1|C2|U|1415
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS7
- Chain SQ
- Small ribosomal subunit protein uS9A
- Chain SR
- Small ribosomal subunit protein eS17A
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
- Chain Sg
- Small ribosomal subunit protein RACK1
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