J3_8OEQ_006
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8OEQ|1|1|A|398, 8OEQ|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_006 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0444
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OEQ|1|1|A|369
8OEQ|1|1|U|370
8OEQ|1|1|G|371
8OEQ|1|1|A|372
8OEQ|1|1|A|373
8OEQ|1|1|A|374
8OEQ|1|1|A|375
8OEQ|1|1|G|376
8OEQ|1|1|A|377
8OEQ|1|1|A|378
8OEQ|1|1|C|379
*
8OEQ|1|1|G|390
8OEQ|1|1|A|391
8OEQ|1|1|G|392
8OEQ|1|1|U|393
8OEQ|1|1|G|394
8OEQ|1|1|A|395
8OEQ|1|1|A|396
8OEQ|1|1|A|397
8OEQ|1|1|A|398
8OEQ|1|1|A|399
8OEQ|1|1|G|400
8OEQ|1|1|U|401
8OEQ|1|1|A|402
8OEQ|1|1|C|403
8OEQ|1|1|G|404
*
8OEQ|1|4|C|19
8OEQ|1|4|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 9
- Ribosomal protein L24
- Chain AM
- 60S ribosomal protein L39
- Chain l
- 60S ribosomal protein L4-B
- Chain x
- Ribosomal protein L22
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