J3_8OEQ_010
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAG*CGUAG*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_010 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.0441
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8OEQ|1|1|U|825
8OEQ|1|1|A|826
8OEQ|1|1|G|827
*
8OEQ|1|1|C|859
8OEQ|1|1|G|860
8OEQ|1|1|U|861
8OEQ|1|1|A|862
8OEQ|1|1|G|863
*
8OEQ|1|1|U|888
8OEQ|1|1|C|889
8OEQ|1|1|G|890
8OEQ|1|1|A|891
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein L34-B
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-B
- Chain z
- 60S ribosomal protein L19-A
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