J3_8OEQ_012

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OEQ_012 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.0602

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8OEQ|1|1|G|1226
8OEQ|1|1|A|1227
8OEQ|1|1|C|1228
*
8OEQ|1|1|G|1252
8OEQ|1|1|C|1253
8OEQ|1|1|U|1254
8OEQ|1|1|A|1255
8OEQ|1|1|A|1256
8OEQ|1|1|G|1257
8OEQ|1|1|G|1258
*
8OEQ|1|1|C|1273
8OEQ|1|1|A|1274
8OEQ|1|1|C|1275

Current chains

Chain 1

25S ribosomal RNA

Nearby chains