J3_8OEQ_019
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- 8OEQ|1|1|U|2492
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_019 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.0419
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|1|A|2410
8OEQ|1|1|U|2411
8OEQ|1|1|U|2412
8OEQ|1|1|G|2413
*
8OEQ|1|1|C|2490
8OEQ|1|1|U|2491
8OEQ|1|1|U|2492
8OEQ|1|1|A|2493
8OEQ|1|1|U|2494
8OEQ|1|1|U|2495
*
8OEQ|1|1|A|2562
8OEQ|1|1|A|2563
8OEQ|1|1|G|2564
8OEQ|1|1|A|2565
8OEQ|1|1|C|2566
8OEQ|1|1|A|2567
8OEQ|1|1|U|2568
8OEQ|1|1|U|2569
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L36
- Chain j
- 60S ribosomal protein L2-B
- Chain p
- 60S ribosomal protein L8
- Chain v
- 60S ribosomal protein L15-A
Coloring options: