J3_8OEQ_022
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8OEQ|1|1|A|2675, 8OEQ|1|1|A|2677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_022 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.0508
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OEQ|1|1|C|2636
8OEQ|1|1|U|2637
8OEQ|1|1|C|2638
*
8OEQ|1|1|G|2662
8OEQ|1|1|A|2663
8OEQ|1|1|A|2664
*
8OEQ|1|1|U|2673
8OEQ|1|1|A|2674
8OEQ|1|1|A|2675
8OEQ|1|1|A|2676
8OEQ|1|1|A|2677
8OEQ|1|1|G|2678
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 60S ribosomal protein L21-A
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AP
- 60S ribosomal protein L42-B
- Chain i
- 60S ribosomal protein CAALFM_C304810CA
- Chain m
- Uncharacterized protein CaJ7.0206
- Chain s
- 60S ribosomal protein L11-B
Coloring options: