J3_8OEQ_028
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGAAG*CGACG
- Length
- 26 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|116, 8OEQ|1|AS|G|119, 8OEQ|1|AS|A|120, 8OEQ|1|AS|A|155
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_028 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0624
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|AS|C|112
8OEQ|1|AS|A|113
8OEQ|1|AS|A|114
8OEQ|1|AS|A|115
8OEQ|1|AS|U|116
8OEQ|1|AS|U|117
8OEQ|1|AS|U|118
8OEQ|1|AS|G|119
8OEQ|1|AS|A|120
8OEQ|1|AS|A|121
8OEQ|1|AS|A|122
*
8OEQ|1|AS|U|148
8OEQ|1|AS|A|149
8OEQ|1|AS|A|150
8OEQ|1|AS|U|151
8OEQ|1|AS|U|152
8OEQ|1|AS|U|153
8OEQ|1|AS|G|154
8OEQ|1|AS|A|155
8OEQ|1|AS|A|156
8OEQ|1|AS|G|157
*
8OEQ|1|AS|C|263
8OEQ|1|AS|G|264
8OEQ|1|AS|A|265
8OEQ|1|AS|C|266
8OEQ|1|AS|G|267
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain BC
- 60S ribosomal protein L8
- Chain BG
- 60S ribosomal protein L13
- Chain BI
- 60S ribosomal protein L15-A
- Chain CC
- Ribosomal protein L29
- Chain CD
- 60S ribosomal protein L36
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