J3_8OEQ_030
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAUG*CGUCACAGAG*CGUGCG
- Length
- 21 nucleotides
- Bulged bases
- 8OEQ|1|AS|C|209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_030 not in the Motif Atlas
- Homologous match to J3_8C3A_046
- Geometric discrepancy: 0.0626
- The information below is about J3_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24131.1
- Basepair signature
- cWW-F-cSS-cHH-cWW-cWW-F-cWW-cSW-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|AS|C|184
8OEQ|1|AS|U|185
8OEQ|1|AS|A|186
8OEQ|1|AS|U|187
8OEQ|1|AS|G|188
*
8OEQ|1|AS|C|204
8OEQ|1|AS|G|205
8OEQ|1|AS|U|206
8OEQ|1|AS|C|207
8OEQ|1|AS|A|208
8OEQ|1|AS|C|209
8OEQ|1|AS|A|210
8OEQ|1|AS|G|211
8OEQ|1|AS|A|212
8OEQ|1|AS|G|213
*
8OEQ|1|AS|C|225
8OEQ|1|AS|G|226
8OEQ|1|AS|U|227
8OEQ|1|AS|G|228
8OEQ|1|AS|C|229
8OEQ|1|AS|G|230
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AY
- 60S ribosomal protein L4-B
- Chain BT
- Ribosomal protein L24
Coloring options: