J3_8OEQ_031
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|343, 8OEQ|1|AS|A|351, 8OEQ|1|AU|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_031 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0512
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
8OEQ|1|AS|C|340
8OEQ|1|AS|G|341
8OEQ|1|AS|A|342
8OEQ|1|AS|U|343
8OEQ|1|AS|A|344
8OEQ|1|AS|G|345
8OEQ|1|AS|C|346
8OEQ|1|AS|G|347
8OEQ|1|AS|A|348
8OEQ|1|AS|A|349
8OEQ|1|AS|C|350
8OEQ|1|AS|A|351
8OEQ|1|AS|A|352
8OEQ|1|AS|G|353
8OEQ|1|AS|U|354
8OEQ|1|AS|A|355
8OEQ|1|AS|C|356
*
8OEQ|1|AS|G|363
8OEQ|1|AS|G|364
8OEQ|1|AS|A|365
8OEQ|1|AS|A|366
8OEQ|1|AS|A|367
8OEQ|1|AS|G|368
*
8OEQ|1|AU|C|21
8OEQ|1|AU|U|22
8OEQ|1|AU|U|23
8OEQ|1|AU|G|24
Current chains
- Chain AS
- 25S ribosomal RNA
- Chain AU
- 5.8S ribosomal RNA
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BT
- Ribosomal protein L24
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
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