J3_8OEQ_040
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 8OEQ|1|AS|A|1478
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_040 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.055
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8OEQ|1|AS|U|1475
8OEQ|1|AS|G|1476
8OEQ|1|AS|A|1477
8OEQ|1|AS|A|1478
8OEQ|1|AS|G|1479
8OEQ|1|AS|U|1480
8OEQ|1|AS|G|1481
*
8OEQ|1|AS|C|1853
8OEQ|1|AS|A|1854
8OEQ|1|AS|A|1855
*
8OEQ|1|AS|U|1867
8OEQ|1|AS|C|1868
8OEQ|1|AS|U|1869
8OEQ|1|AS|A|1870
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain BM
- 60S ribosomal protein L19-A
- Chain CB
- 60S ribosomal protein L34-B
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