J3_8OEQ_043
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAACG*CAACCAU
- Length
- 23 nucleotides
- Bulged bases
- 8OEQ|1|AS|C|1552, 8OEQ|1|AS|A|1554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_043 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.0959
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|AS|A|1533
8OEQ|1|AS|G|1534
8OEQ|1|AS|A|1535
8OEQ|1|AS|U|1536
8OEQ|1|AS|G|1537
8OEQ|1|AS|G|1538
*
8OEQ|1|AS|C|1547
8OEQ|1|AS|G|1548
8OEQ|1|AS|U|1549
8OEQ|1|AS|U|1550
8OEQ|1|AS|U|1551
8OEQ|1|AS|C|1552
8OEQ|1|AS|A|1553
8OEQ|1|AS|A|1554
8OEQ|1|AS|C|1555
8OEQ|1|AS|G|1556
*
8OEQ|1|AS|C|1574
8OEQ|1|AS|A|1575
8OEQ|1|AS|A|1576
8OEQ|1|AS|C|1577
8OEQ|1|AS|C|1578
8OEQ|1|AS|A|1579
8OEQ|1|AS|U|1580
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AW
- 60S ribosomal protein L2-B
- Chain BC
- 60S ribosomal protein L8
- Chain BI
- 60S ribosomal protein L15-A
- Chain BS
- 60S ribosomal protein L25
- Chain CE
- 60S ribosomal protein L37-B
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