J3_8OEQ_056

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8OEQ|1|B|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OEQ_056 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0504

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OEQ|1|B|A|41
8OEQ|1|B|G|42
8OEQ|1|B|A|43
8OEQ|1|B|U|44
8OEQ|1|B|U|45
8OEQ|1|B|A|46
8OEQ|1|B|A|47
8OEQ|1|B|G|48
*
8OEQ|1|B|C|429
8OEQ|1|B|G|430
8OEQ|1|B|C|431
8OEQ|1|B|G|432
8OEQ|1|B|C|433
8OEQ|1|B|A|434
8OEQ|1|B|A|435
8OEQ|1|B|A|436
8OEQ|1|B|U|437
*
8OEQ|1|B|A|462
8OEQ|1|B|G|463
8OEQ|1|B|U|464

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein S4

Chain Z

Ribosomal protein S23 (S12)