J3_8OEQ_060
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUCAG*CUAACUACUG*CAUUU
- Length
- 20 nucleotides
- Bulged bases
- 8OEQ|1|B|C|919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_060 not in the Motif Atlas
- Homologous match to J3_8C3A_036
- Geometric discrepancy: 0.0445
- The information below is about J3_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08408.1
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|B|A|866
8OEQ|1|B|U|867
8OEQ|1|B|C|868
8OEQ|1|B|A|869
8OEQ|1|B|G|870
*
8OEQ|1|B|C|912
8OEQ|1|B|U|913
8OEQ|1|B|A|914
8OEQ|1|B|A|915
8OEQ|1|B|C|916
8OEQ|1|B|U|917
8OEQ|1|B|A|918
8OEQ|1|B|C|919
8OEQ|1|B|U|920
8OEQ|1|B|G|921
*
8OEQ|1|B|C|928
8OEQ|1|B|A|929
8OEQ|1|B|U|930
8OEQ|1|B|U|931
8OEQ|1|B|U|932
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L43-A
- Chain D
- 40S ribosomal protein S1
- Chain P
- 40S ribosomal protein S13
- Chain Q
- 40S ribosomal protein S14-A
- Chain c
- 40S ribosomal protein S26
Coloring options: