J3_8OEQ_066
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_066 not in the Motif Atlas
- Homologous match to J3_8C3A_042
- Geometric discrepancy: 0.0564
- The information below is about J3_8C3A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67213.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|B|U|1267
8OEQ|1|B|U|1268
8OEQ|1|B|C|1269
8OEQ|1|B|U|1270
8OEQ|1|B|U|1271
8OEQ|1|B|A|1272
8OEQ|1|B|G|1273
*
8OEQ|1|B|C|1312
8OEQ|1|B|G|1313
8OEQ|1|B|A|1314
8OEQ|1|B|G|1315
8OEQ|1|B|A|1316
8OEQ|1|B|C|1317
*
8OEQ|1|B|G|1405
8OEQ|1|B|C|1406
8OEQ|1|B|A|1407
8OEQ|1|B|A|1408
8OEQ|1|B|U|1409
8OEQ|1|B|A|1410
8OEQ|1|B|A|1411
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal protein S5
- Chain F
- Ribosomal protein S3
- Chain S
- 40S ribosomal protein S16
- Chain T
- 40S ribosomal protein S17-B
- Chain W
- Ribosomal protein S10
- Chain f
- 40S ribosomal protein S29A
- Chain i
- 60S ribosomal protein CAALFM_C304810CA
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