J3_8OEQ_069
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 8OEQ|1|B|U|1399, 8OEQ|1|B|U|1400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_069 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.0878
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|B|A|1321
8OEQ|1|B|A|1322
8OEQ|1|B|C|1323
*
8OEQ|1|B|G|1372
8OEQ|1|B|G|1373
8OEQ|1|B|A|1374
8OEQ|1|B|C|1375
8OEQ|1|B|U|1376
8OEQ|1|B|A|1377
*
8OEQ|1|B|U|1393
8OEQ|1|B|G|1394
8OEQ|1|B|G|1395
8OEQ|1|B|A|1396
8OEQ|1|B|A|1397
8OEQ|1|B|G|1398
8OEQ|1|B|U|1399
8OEQ|1|B|U|1400
8OEQ|1|B|U|1401
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain AR
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain H
- Ribosomal protein S7
- Chain S
- 40S ribosomal protein S16
- Chain T
- 40S ribosomal protein S17-B
- Chain W
- Ribosomal protein S10
- Chain f
- 40S ribosomal protein S29A
Coloring options: