J3_8OEQ_071

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OEQ_071 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.0408

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8OEQ|1|CM|A|41
8OEQ|1|CM|G|42
*
8OEQ|1|CM|C|431
8OEQ|1|CM|G|432
8OEQ|1|CM|C|433
8OEQ|1|CM|A|434
8OEQ|1|CM|A|435
8OEQ|1|CM|A|436
8OEQ|1|CM|U|437
*
8OEQ|1|CM|A|462
8OEQ|1|CM|G|463
8OEQ|1|CM|U|464

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CW

Ribosomal protein S4

Chain DK

Ribosomal protein S23 (S12)