J3_8OEQ_078

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OEQ_078 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.0401

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8OEQ|1|CM|C|1146
8OEQ|1|CM|C|1147
8OEQ|1|CM|A|1148
8OEQ|1|CM|G|1149
*
8OEQ|1|CM|C|1568
8OEQ|1|CM|U|1569
8OEQ|1|CM|A|1570
8OEQ|1|CM|G|1571
8OEQ|1|CM|U|1572
8OEQ|1|CM|A|1573
8OEQ|1|CM|A|1574
*
8OEQ|1|CM|U|1596
8OEQ|1|CM|G|1597
8OEQ|1|CM|A|1598
8OEQ|1|CM|U|1599
8OEQ|1|CM|U|1600
8OEQ|1|CM|A|1601
8OEQ|1|CM|C|1602
8OEQ|1|CM|G|1603

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CS

Ribosomal protein S7

Chain DD

40S ribosomal protein S16

Chain DP

40S ribosomal protein S28-B