J3_8OEQ_083

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OEQ_083 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0516

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8OEQ|1|CM|U|1278
8OEQ|1|CM|G|1279
*
8OEQ|1|CM|U|1288
8OEQ|1|CM|G|1289
8OEQ|1|CM|U|1290
8OEQ|1|CM|C|1291
*
8OEQ|1|CM|G|1303
8OEQ|1|CM|A|1304
8OEQ|1|CM|U|1305
8OEQ|1|CM|A|1306
8OEQ|1|CM|A|1307

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CN

40S ribosomal protein S0

Chain CP

Ribosomal protein S5

Chain DE

40S ribosomal protein S17-B