J3_8OH6_004
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8OH6|1|1|U|343, 8OH6|1|1|A|351, 8OH6|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_004 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0356
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
8OH6|1|1|C|340
8OH6|1|1|G|341
8OH6|1|1|A|342
8OH6|1|1|U|343
8OH6|1|1|A|344
8OH6|1|1|G|345
8OH6|1|1|C|346
8OH6|1|1|G|347
8OH6|1|1|A|348
8OH6|1|1|A|349
8OH6|1|1|C|350
8OH6|1|1|A|351
8OH6|1|1|A|352
8OH6|1|1|G|353
8OH6|1|1|U|354
8OH6|1|1|A|355
8OH6|1|1|C|356
*
8OH6|1|1|G|363
8OH6|1|1|G|364
8OH6|1|1|A|365
8OH6|1|1|A|366
8OH6|1|1|A|367
8OH6|1|1|G|368
*
8OH6|1|4|C|21
8OH6|1|4|U|22
8OH6|1|4|U|23
8OH6|1|4|G|24
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
- Chain 4
- 5.8S
Nearby chains
- Chain 9
- Ribosomal protein L24
- Chain AK
- 60S ribosomal protein L37-B
- Chain AM
- 60S ribosomal protein L39
- Chain l
- 60S ribosomal protein L4-B
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