J3_8OH6_012

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OH6_012 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.223

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8OH6|1|1|G|1226
8OH6|1|1|A|1227
8OH6|1|1|C|1228
*
8OH6|1|1|G|1252
8OH6|1|1|C|1253
8OH6|1|1|U|1254
8OH6|1|1|A|1255
8OH6|1|1|A|1256
8OH6|1|1|G|1257
8OH6|1|1|G|1258
*
8OH6|1|1|C|1273
8OH6|1|1|A|1274
8OH6|1|1|C|1275

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain 12

60S ribosomal protein L12-A