J3_8OH6_013
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 8OH6|1|1|A|1478, 8OH6|1|1|U|1480
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_013 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.0419
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8OH6|1|1|U|1475
8OH6|1|1|G|1476
8OH6|1|1|A|1477
8OH6|1|1|A|1478
8OH6|1|1|G|1479
8OH6|1|1|U|1480
8OH6|1|1|G|1481
*
8OH6|1|1|C|1853
8OH6|1|1|A|1854
8OH6|1|1|A|1855
*
8OH6|1|1|U|1867
8OH6|1|1|C|1868
8OH6|1|1|U|1869
8OH6|1|1|A|1870
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AH
- 60S ribosomal protein L34-B
- Chain z
- 60S ribosomal protein L19-A
Coloring options: