J3_8OH6_015
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_015 not in the Motif Atlas
- Homologous match to J3_8C3A_052
- Geometric discrepancy: 0.0492
- The information below is about J3_8C3A_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8OH6|1|1|U|1522
8OH6|1|1|C|1523
8OH6|1|1|G|1524
8OH6|1|1|A|1525
8OH6|1|1|U|1526
8OH6|1|1|C|1527
*
8OH6|1|1|G|1587
8OH6|1|1|G|1588
8OH6|1|1|A|1589
8OH6|1|1|A|1590
8OH6|1|1|U|1591
*
8OH6|1|1|A|1608
8OH6|1|1|A|1609
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- 60S ribosomal protein L25
- Chain AH
- 60S ribosomal protein L34-B
- Chain AL
- 60S ribosomal protein L38
- Chain AM
- 60S ribosomal protein L39
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