J3_8OH6_019
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- 8OH6|1|1|U|2492
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_019 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.0484
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|1|A|2410
8OH6|1|1|U|2411
8OH6|1|1|U|2412
8OH6|1|1|G|2413
*
8OH6|1|1|C|2490
8OH6|1|1|U|2491
8OH6|1|1|U|2492
8OH6|1|1|A|2493
8OH6|1|1|U|2494
8OH6|1|1|U|2495
*
8OH6|1|1|A|2562
8OH6|1|1|A|2563
8OH6|1|1|G|2564
8OH6|1|1|A|2565
8OH6|1|1|C|2566
8OH6|1|1|A|2567
8OH6|1|1|U|2568
8OH6|1|1|U|2569
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AJ
- 60S ribosomal protein L36
- Chain j
- 60S ribosomal protein L2-B
- Chain p
- 60S ribosomal protein L8
- Chain v
- 60S ribosomal protein L15-A
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